Data manipulation | Materialisation | Morphometrics Software

Data manipulation

Analyze
Provides an environment for the interactive visualisation and manipulation of 2-D, 3-D and 4-D biomedical images

Amira
visualisation, data analysis, geometry reconstruction.

3DVIEWNIX
visualizing, manipulating, and analyzing multidimensional, multimodality image information. It is designed to run on Unix machines under X-windows

Edgewarp3D (free)
Edgewarp is a sophisticated workstation package for manipulation of 2D and 3D biomedical images and related data structures by a combination of landmark location, thin-plate spline, and image unwarping and averaging.

MRIcro (free)
Converts medical images to SPM friendly Analyze format, creates and overlaps 3D regions of interest (with computed volume&intensity) and exports images to BMP, JPEG, PNG or TIF format.

DICOM Standard (free)
DICOM Standard : transfer and storage of medical images.DICOM introduction and a long list of links to free DICOM viewers.

ImageJ (free)
analysis of MR data

doimaging.com (free)
free medical imaging applications and resources: conversion programs, image display and analysis, surface and volume rendering.

ImageMAGIC (free)
to create, edit, and compose bitmap images. Images can be cropped, colors can be changed, various effects can be applied, images can be rotated and combined.

Materialise (free)
Prototypes make CAD data visible to everyone

Deskartes (free)
a wide selection of tools for viewing, rendering, verifying, measuring and communicating 3D CAD data

DigitX by X. Penin (free)
Digitize landmarks on JPEG, BMP or WMF images

TPSdig by F.J. Rohlf (free)
program for digitizing landmarks and outlines for geometric morphometric analyses.

COO by Jean-Pierre Dujardin (free)
COO is a program for collecting landmarks on pictures

Diverse Software ( free/not free )
Visualisation software links

OpenDX (IBM) (free)
software package used to analyze and create visual representations of any kind of data.

VTK (free)
VTK is for 3D computer graphics, image processing, and visualization ( with C++ class library, and several interpreted interface layers including Tcl/Tk, Java, and Python).

3D Constructor
Windows-based contour editor and visualizer

BOB by GVLware (free)
a set of tools to work with large, time dependent 2D and 3D data sets. FTP download

CT (free)
CT programs (requires old (K&R) C compiler); accompanies the book "Principles of Computerized Tomographic Imaging" by A. C. Kak and Malcolm Slaney (IEEE Press, 1988). Mail to author for further information.

Materialisation

Magics X
Software for Rapid Prototyping

Morphometrics Software

Morpheus by Dennis Slice (free)
Morpheus et al. is a software package that will provide a comprehensive, cross-platform environment for morphometric data analysis.

APS by X. Penin (free)
Statistical shape analysis software

morphometrika by Jeffrey A. Walker (free)
diverse software available for Mac OS

morphologika by Paul OHiggins/Nicholas Jones (free for non-profit purposes)Windows-based software provides tools for the analysis of variations in size and shape of objects described in terms of 3d landmark coordinates

TPS suite by F.J. Rohlf (free)
"tps suite" is series of programs working with TPS fole format. TPS. Only allow to work with 2D objects.

PAST
PAST include common statistical, plotting and modelling functions

BAC and PAD by Jean-Pierre Dujardin (free)
Multivariate analyses

ASI by Jean-Pierre Dujardin (free)
Symmetry of size, symmetry of shape, contains routines for the statistical analysis of shapes

Shape by Hiroyoshi Iwata (free)
Quantitative Evaluation of Biological Shapes based on Elliptic Fourier Description